What exactly does the US Navy have against Lt. Gordon Klingenschmitt, former chaplin aboard the USS Anzio?

Apparently, the chaplin dared to stick to his Christian churches' (Episcopal AND Roman Catholic) teaching on homosexuality, heaven & hell, sin, death, etc. (you know, all that Jesus stuff) and the Navy sent him ashore. This, and this is the Chaplin's side of the story. Call me old fashioned, but I think he makes a lot of sense and the Captain of the Anzio appears unworthy of a ship bearing that hallowed name.
The AP reported yesterday the Navy is reviewing Lt. Klingenschmitt's complaint.